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Sherbrooke Connectivity Imaging Lab

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI.

Sherbrooke Connectivity Imaging Laboratory

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI acquisition, reconstruction, tractography, processing and visualization. The aim of the SCIL is to better understand structural connectivity, develop novel tractography algorithms, validate them and use them for human brain mapping and connectomics applications.

Useful links:

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  1. scilpy scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    Python 103 78

  2. tractoflow tractoflow Public

    TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

    Nextflow 65 28

  3. scil-documentation scil-documentation Public

    Documentation for the SCIL

    Python 4 21

Repositories

Showing 10 of 61 repositories
  • scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    scilus/scilpy's past year of commit activity
    Python 103 78 42 16 Updated Oct 21, 2026
  • scilus_website Public

    SCIL website

    scilus/scilus_website's past year of commit activity
    HTML 0 MIT 8 0 0 Updated Oct 19, 2026
  • sf-pediatric Public

    sf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.

    scilus/sf-pediatric's past year of commit activity
    Nextflow 12 MIT 1 1 0 Updated Oct 19, 2026
  • scilus/tractometer_website's past year of commit activity
    HTML 1 MIT 2 0 0 Updated Oct 19, 2026
  • ismrm_2015_tractography_challenge_scoring Public

    Scripts used to recreate the results of the ISMRM 2015 Tractography Challenge

    scilus/ismrm_2015_tractography_challenge_scoring's past year of commit activity
    Python 19 9 1 0 Updated Oct 19, 2026
  • sf-tractomics Public

    Diffusion MRI Pipeline for human brain

    scilus/sf-tractomics's past year of commit activity
    Nextflow 8 MIT 10 7 1 Updated Oct 18, 2026
  • trigeminal Public
    scilus/trigeminal's past year of commit activity
    Shell 0 3 0 2 Updated Oct 14, 2026
  • neurogister Public
    scilus/neurogister's past year of commit activity
    Python 2 1 1 1 Updated Oct 5, 2026
  • mi-brain Public
    scilus/mi-brain's past year of commit activity
    C++ 1 0 5 1 Updated Sep 29, 2026
  • scil-documentation Public

    Documentation for the SCIL

    scilus/scil-documentation's past year of commit activity
    Python 4 21 12 6 Updated Sep 8, 2026