Issues

• Prototype: exact, batched JAX Monte Carlo for the RNA Pol II tutorial

  salilab/imp#1131 · Filter by author aozalevsky opened on Oct 20, 2026

• Close pair lists can miss pairs when rigid bodies move

  salilab/imp#1130 · Filter by author aozalevsky opened on Oct 17, 2026

• JAX: float32 rigid body update loses precision on GPU (TF32 matmul)

  salilab/imp#1129 · Filter by author aozalevsky opened on Oct 17, 2026

• test_jax_rigid_body_position_constraint fails randomly (float32 rounding)

  salilab/imp#1128 · Filter by author aozalevsky opened on Oct 17, 2026

• ClosePairContainer incremental update can miss overlapping pairs

  salilab/imp#1122 · Filter by author aozalevsky opened on Oct 15, 2026

• GaussianEMRestraint (isd and bayesianem) score depends on close pair list history

  salilab/imp#1121 · Filter by author aozalevsky opened on Oct 15, 2026
  4

  

• isd.CrossLinkMSRestraint doesn't compute the published cross-link forward model

  salilab/imp#1120 · Filter by author aozalevsky opened on Oct 15, 2026

• EM restraints use stale covariances for Gaussians in rigid bodies

  salilab/imp#1119 · Filter by author aozalevsky opened on Oct 13, 2026

• Support multiple coordinate sets per Model

  JAX
  salilab/imp#1116 · Filter by author benmwebb opened on Oct 5, 2026
  

• Add Python pickle buffer support

  performance
  salilab/imp#1080 · Filter by author benmwebb opened on Mar 30, 2023
  1

  

• IMP/pmi returns type error during RB construction

  salilab/imp#1074 · Filter by author Pellarin opened on Nov 22, 2022
  4

  

• SampledDensityMap - Which constructor is chosen affects results.

  bugIMP.em
  salilab/imp#1036 · Filter by author ichem001 opened on Nov 9, 2020
  3

  

• Missing volume estimates for nucleic acids

  feature requestIMP.atom
  salilab/imp#1027 · Filter by author benmwebb opened on Dec 9, 2019 · IMP 2.13.0 release
  

• RWMC fails for bounded Nuisances with defined score at the boundary

  salilab/imp#1023 · Filter by author sethaxen opened on Sep 8, 2019

• Introduce families of distributions and a DistributionRestraint

  feature request
  salilab/imp#1021 · Filter by author sethaxen opened on Sep 7, 2019

• Raise exception when derivatives are requested from non-differentiable restraint

  salilab/imp#1020 · Filter by author sethaxen opened on Sep 7, 2019

• GSL simplex error when using high pixel size in EM2D

  salilab/imp#1014 · Filter by author ichem001 opened on May 24, 2019
  

• Add SingletonDerivativeModifier complement to TransformationSymmetry

  feature request
  salilab/imp#1011 · Filter by author sethaxen opened on Sep 26, 2018
  

• Add interface to NAMD

  feature request
  salilab/imp#1010 · Filter by author benmwebb opened on Sep 20, 2018
  4

  

• Reimplement Nuisance to sample in an unconstrained space

  feature requestIMP.isd
  salilab/imp#1007 · Filter by author sethaxen opened on Aug 9, 2018
  3

  

• Truncate IMP.isd.GaussianRestraint and IMP.isd.StudentTRestraint properly

  IMP.isd
  salilab/imp#1006 · Filter by author sethaxen opened on Jul 30, 2018
  

• SampledDensityMap - Model and map generated from model do not align.

  bug
  salilab/imp#1002 · Filter by author ichem001 opened on Apr 3, 2018
  1

• XLs restraint: stat file reports only the likelihood as score

  salilab/imp#1000 · Filter by author iecheverria opened on Feb 9, 2018
  1

• error in CloseBipartitePairContainer when including pairs on same rigid body

  bug
  salilab/imp#998 · Filter by author jtempkin opened on Nov 17, 2017

• missing density band when using SampledDensityMaps

  salilab/imp#987 · Filter by author ichem001 opened on Jul 31, 2017