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Mark scipenn non-applicable outside GEX -> ADT - #77

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rcannood merged 2 commits into
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fix/scipenn_non_applicable
Sep 29, 2026
Merged

rcannood merged 2 commits into
mainfrom
fix/scipenn_non_applicable

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In run_2026-09-28 all twelve scipenn failures were on the swap and multiome datasets, where it raised a ValueError and got retried.

Describe your changes

  • scipenn: exit 99 (non-applicable) outside GEX -> ADT, like the other CITE-only methods.

Checklist before requesting a review

  • I have performed a self-review of my code

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality
    • Major changes
    • Minor changes
    • Bug fixes
  • Proposed changes are described in the CHANGELOG.md

  • CI Tests succeed and look good!

@rcannood
rcannood merged commit 0688615 into main Sep 29, 2026
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@rcannood
rcannood deleted the fix/scipenn_non_applicable branch September 29, 2026 17:10
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