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Add energy and force predictions, loss optimization - #207

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@mattwthompson

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Closes #198 (picked up for free)
Closes #148 (when it works - not yet functional)

Can probably do #199 here too

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codecov-commenter commented Oct 20, 2026 •

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 82.04%. Comparing base (ac1839b) to head (7991891).

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #207   +/-   ##
=======================================
  Coverage   82.04%   82.04%           
=======================================
  Files          59       59           
  Lines        5308     5308           
=======================================
  Hits         4355     4355           
  Misses        953      953           

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@mattwthompson

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I'm probably missing something obvious, but I'm not getting any actual parameter updates with this code as-is, i.e.

$ diff examples/mvp/EPOCH_0/current_force_field.offxml examples/mvp/EPOCH_1/current_force_field.offxml | wc -l
       0

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Get energy.predict working with new thermo code Run fit with Adams optimizer, across SLURM distributed compute, co-optimised with energies and forces

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