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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    HTML 841 165

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 180 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 365 64

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 200 44

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 719 115

Repositories

Showing 10 of 399 repositories
  • pic-sure Public

    PIC-SURE API

    hms-dbmi/pic-sure's past year of commit activity
    Java 6 Apache-2.0 5 0 21 Updated Oct 2, 2026
  • pic-sure-baseline-release-control Public
    hms-dbmi/pic-sure-baseline-release-control's past year of commit activity
    0 6 0 0 Updated Oct 2, 2026
  • udi-yac Public

    Monorepo containing front-end/back-end code for the UDI visualization language and YAC chat interface.

    hms-dbmi/udi-yac's past year of commit activity
    Python 4 MIT 2 59 10 Updated Oct 2, 2026
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control's past year of commit activity
    1 Apache-2.0 9 0 0 Updated Oct 2, 2026
  • uchimata Public

    Library for visualizing three-dimensional genome models and associated genomics data

    hms-dbmi/uchimata's past year of commit activity
    TypeScript 9 MIT 0 4 4 Updated Oct 2, 2026
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend's past year of commit activity
    TypeScript 1 Apache-2.0 3 1 20 Updated Oct 2, 2026
  • avillachlab-jenkins-bdc-etl Public
    hms-dbmi/avillachlab-jenkins-bdc-etl's past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Oct 2, 2026
  • i2b2v2-webclient Public

    Harvard Catalyst group's working repo

    hms-dbmi/i2b2v2-webclient's past year of commit activity
    JavaScript 2 6 0 3 Updated Oct 1, 2026
  • biodata_catalyst_stigmatizing_variables Public
    hms-dbmi/biodata_catalyst_stigmatizing_variables's past year of commit activity
    Python 2 Apache-2.0 0 0 0 Updated Oct 1, 2026
  • cvh Public

    A collaborative platform for creating and sharing interactive genomic, spatial, and single-cell visualizations. Powered by Gosling and Vitessce.

    hms-dbmi/cvh's past year of commit activity
    TypeScript 5 MIT 0 50 0 Updated Oct 1, 2026
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