Skip to content
View dnncha's full-sized avatar
🫡
🫡
18 followers · 63 following

Achievements

Achievement: Pair Extraordinairex4Achievement: Pull Sharkx4Achievement: YOLOAchievement: Quickdraw

Achievements

Achievement: Pair Extraordinairex4Achievement: Pull Sharkx4Achievement: YOLOAchievement: Quickdraw

Block or report dnncha

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Content in all repositories owned by your account will be closed.
Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
Dnncha/README.md

Donncha O’Toole

I build open-source bioinformatics tools and investigate the code behind scientific results, based in Ireland.

X / @dnncha · Notchbird

Bioinformatics software

  • DotMatch — deterministic assignment of sequencing reads to known CRISPR guides, inline barcodes, primers and other targets. Source.
  • Turbo Picard — selected Picard-compatible preprocessing and quality-control commands in Rust. An evaluation release: assess compatibility one pipeline step at a time.

Scientific red-teaming

I check calculations in scientific software, write tests for bugs I find and propose fixes. So far, this has covered sequence processing, genomic intervals, statistics and single-cell benchmarks.

Pinned Loading

  1. turbo-picard turbo-picard Public

    Picard-compatible Rust tools for faster SAM/BAM/CRAM, VCF, duplicate-marking and sequencing-QC workflows.

    Rust 4

  2. dotmatch dotmatch Public

    Fast exact short-DNA known-target assignment for CRISPR guides, barcodes, primers, panels, and whitelists.

    Python 1