tests/conftest.py starts MinIO to exercise the object-storage paths. MinIO has withdrawn from public distribution, so that dependency now rests on a third party continuing to publish builds of an archived codebase. #1559 restored CI by switching to Chainguard's build; this issue is about whether to keep depending on MinIO at all.
Filing it separately on purpose: #1559 was the release-eve fix and needed to change no test code. This one needs measurement, and picking wrong here produces the worst kind of green — a suite that passes while the behavior it claims to cover is untested.
Why the current position is not stable
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| Oct 2025 |
MinIO stopped publishing free community builds |
| Feb 2026 |
open-source repository archived |
| 2026-09-11 |
minio/minio deleted from Docker Hub — the whole repository, every tag |
| 2026-09-24 |
quay.io/minio/minio began requiring authentication |
Chainguard's build is a good mitigation and the right call for now — it is public, credential-free, drop-in for MinioContainer, and rebuilt continuously, where the last community image is a year stale.
But continuous rebuilds address the base image and dependencies. A defect in MinIO's own Go code has no upstream fix, because upstream is archived — worth confirming against Chainguard's advisory data rather than taking from me. And the arrangement depends on a third party's free tier continuing, for software whose vendor has already shown its direction. That is a reasonable place to stand for a release, and a poor place to stand indefinitely.
What a replacement has to satisfy
This is the part that decides it, and it rules out the obvious shortcut.
DataJoint reaches object storage through fsspec/s3fs, not boto3. The storage layer calls:
isdir · walk · size · exists · rm · open · pipe_file · get_file · put · put_file · cat_file
S3 has no directories. isdir and walk are emulated by s3fs over list_objects_v2 using common prefixes and zero-byte directory markers, and the emulation is sensitive to how a server reports prefixes, delimiters, and empty keys.
Garbage collection is built directly on that emulation — gc.py:205 and gc.py:255 both walk a store recursively to decide what is orphaned. A server that diverges on listing will not throw; it will return a different set of keys, and GC will classify live files as orphans or miss real ones. test_gc is 44 tests and exists precisely to catch that.
So a lightweight S3 mock is the tempting choice and the risky one. Fidelity on listing matters more here than startup time.
Candidates
All three pull publicly today, verified:
| Image |
Notes |
chrislusf/seaweedfs |
real object store with an S3 gateway, Apache-2.0, actively maintained |
localstack/localstack |
full AWS emulator, very widely used, heavier |
adobe/s3mock |
purpose-built test mock, starts in 0.12s against MinIO's 1.0s — and the one most likely to diverge on listing |
Staying on cgr.dev/chainguard/minio is also a legitimate outcome if the alternatives cost more fidelity than the dependency risk is worth. The point of the exercise is to answer that with evidence rather than assume it.
Acceptance
- The five object-storage suites pass against the candidate from a cold pull, with any local image cache deleted — 118 tests:
test_gc (44), test_object (46), test_npy_codec (22), test_codecs (4), test_attach (2).
test_gc passes specifically, including the prefix-scoping and orphan-detection cases, since that is where listing semantics bite.
- Directory-shaped objects round-trip:
isdir and walk agree with what MinIO reported for the same tree.
- The image is public, needs no credentials, and is actively maintained.
- Nothing changes outside
tests/conftest.py and the fixture; DJ_TEST_MINIO_IMAGE already makes the source swappable.
Out of scope
What DataJoint recommends to customers for production object storage. That is a product question, it touches an existing partnership conversation, and it should not be decided as a side effect of a test-fixture choice.
tests/conftest.pystarts MinIO to exercise the object-storage paths. MinIO has withdrawn from public distribution, so that dependency now rests on a third party continuing to publish builds of an archived codebase. #1559 restored CI by switching to Chainguard's build; this issue is about whether to keep depending on MinIO at all.Filing it separately on purpose: #1559 was the release-eve fix and needed to change no test code. This one needs measurement, and picking wrong here produces the worst kind of green — a suite that passes while the behavior it claims to cover is untested.
Why the current position is not stable
minio/miniodeleted from Docker Hub — the whole repository, every tagquay.io/minio/miniobegan requiring authenticationChainguard's build is a good mitigation and the right call for now — it is public, credential-free, drop-in for
MinioContainer, and rebuilt continuously, where the last community image is a year stale.But continuous rebuilds address the base image and dependencies. A defect in MinIO's own Go code has no upstream fix, because upstream is archived — worth confirming against Chainguard's advisory data rather than taking from me. And the arrangement depends on a third party's free tier continuing, for software whose vendor has already shown its direction. That is a reasonable place to stand for a release, and a poor place to stand indefinitely.
What a replacement has to satisfy
This is the part that decides it, and it rules out the obvious shortcut.
DataJoint reaches object storage through fsspec/s3fs, not boto3. The storage layer calls:
S3 has no directories.
isdirandwalkare emulated by s3fs overlist_objects_v2using common prefixes and zero-byte directory markers, and the emulation is sensitive to how a server reports prefixes, delimiters, and empty keys.Garbage collection is built directly on that emulation —
gc.py:205andgc.py:255both walk a store recursively to decide what is orphaned. A server that diverges on listing will not throw; it will return a different set of keys, and GC will classify live files as orphans or miss real ones.test_gcis 44 tests and exists precisely to catch that.So a lightweight S3 mock is the tempting choice and the risky one. Fidelity on listing matters more here than startup time.
Candidates
All three pull publicly today, verified:
chrislusf/seaweedfslocalstack/localstackadobe/s3mockStaying on
cgr.dev/chainguard/miniois also a legitimate outcome if the alternatives cost more fidelity than the dependency risk is worth. The point of the exercise is to answer that with evidence rather than assume it.Acceptance
test_gc(44),test_object(46),test_npy_codec(22),test_codecs(4),test_attach(2).test_gcpasses specifically, including the prefix-scoping and orphan-detection cases, since that is where listing semantics bite.isdirandwalkagree with what MinIO reported for the same tree.tests/conftest.pyand the fixture;DJ_TEST_MINIO_IMAGEalready makes the source swappable.Out of scope
What DataJoint recommends to customers for production object storage. That is a product question, it touches an existing partnership conversation, and it should not be decided as a side effect of a test-fixture choice.