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Co-authored-by: Astra <noreply@openai.com> Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
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The examples gain an app for the genome tree's FHIR R4 output, the
fhirleaf beside every place, change and copy.12-fhir-viewreads one of each kind of FHIR endpoint: the site Bundle at rs671, TAS2R38's gene Bundle and its change entries, UGT2B17's copy segment, and the haploid site at chrM 263. For each one it renders the Observations as tables of LOINC codes and values, and below them the leaf's own JSON, re-indented with its content and key order unchanged.datasetsgrant tells a missing copy number upload apart from an empty answer.docs/03-data-paths.mdaddsfhirto the tree and a FHIR section: the profiles each endpoint follows, when a leaf is absent, why it carries no dates, how its IDs are derived, and its size limits.fhirleaves the app reads, byte for byte what an Ark serves for the same calls, plus the chrM 263 site.The app ran on Ark Emulator against 1000 Genomes sample HG02953 with every slot filled. rs671 and chrM 263 read absent, since that sample has no genotype at either, and the TAS2R38 and UGT2B17 endpoints rendered with their real calls.
The
fhirleaves need an ArkOS release that serves them. On earlier firmware every endpoint reads absent.