Issues

• About running time

  YangLab/CLEAR#24 · Filter by author HowardChen330 opened on Nov 21, 2025
  1

• Trouble with using 'circ_quant' function (CLEAR with STAR Alignment)

  YangLab/CLEAR#23 · Filter by author jennynuyirs opened on Jun 16, 2024

• Problem with pysam: ValueError: fetch called on bamfile without index

  YangLab/CLEAR#22 · Filter by author BenNiLu opened on Mar 12, 2024
  1

• CLEAR: python2 or python3?

  YangLab/CLEAR#21 · Filter by author nliorni opened on Sep 23, 2022
  3

• IOError: [Errno 2] No such file or directory: circ/genePred.tmp

  YangLab/CLEAR#20 · Filter by author lssb opened on Jan 22, 2022
  4

• NO quant or circular output

  YangLab/CLEAR#19 · Filter by author lbwfff opened on Sep 23, 2021
  2

• TypeError when Running CLEAR: 'NoneType' object is not iterable

  YangLab/CLEAR#18 · Filter by author JerryZhang-1222 opened on Jul 21, 2021
  1

• tophat fusion error

  YangLab/CLEAR#16 · Filter by author sharmi85 opened on Jan 9, 2021
  3

• exonFrames field is being added, -genePredExt but no valid frames

  YangLab/CLEAR#13 · Filter by author sharmi85 opened on Dec 28, 2020
  6

• Tophat-fusion error

  YangLab/CLEAR#10 · Filter by author bounlu opened on Jun 5, 2020
  7

• FPBcirc vs FPBlinear comparison from different sequencing data

  YangLab/CLEAR#8 · Filter by author bounlu opened on Jun 3, 2020

• CLEAR availability in anaconda

  YangLab/CLEAR#7 · Filter by author bounlu opened on Jun 2, 2020