Issues

• Compatibility with circular DNA

  YangLab/CIRCexplorer2#77 · Filter by author MJoseMo opened on Feb 7, 2025

• interpret circRNA coordinate

  YangLab/CIRCexplorer2#75 · Filter by author frankligy opened on Jan 20, 2024

• Reads per gene vs annotation file generated with CIRCexplorer2

  YangLab/CIRCexplorer2#74 · Filter by author andre-gabriel-42 opened on Nov 22, 2023

• Annotation with 0 fusions junctions (STAR alignment)

  YangLab/CIRCexplorer2#73 · Filter by author andre-gabriel-42 opened on Nov 7, 2023
  1

• Annotation step with STAR data

  YangLab/CIRCexplorer2#72 · Filter by author andre-gabriel-42 opened on Nov 6, 2023

• circularRNA_known isoform and exons / outputs information

  YangLab/CIRCexplorer2#71 · Filter by author npont opened on Oct 27, 2023

• IndexError: list index out of range.

  YangLab/CIRCexplorer2#70 · Filter by author jaberdehghani64 opened on Aug 23, 2023
  2

• Convert paired-end RNA-seq to single-read RNA-seq?

  YangLab/CIRCexplorer2#69 · Filter by author junjunlab opened on Aug 18, 2023
  3

• Find circular RNA Fusion from Output of Annotate command

  YangLab/CIRCexplorer2#68 · Filter by author manjumoorthy95 opened on Jun 4, 2023

• Mitochondrial circRNAs with CIRCexploere2

  YangLab/CIRCexplorer2#67 · Filter by author BirongZhang opened on Apr 17, 2023
  2

• why the CIRCexplorer2 is so slow

  YangLab/CIRCexplorer2#66 · Filter by author z-bluesky opened on Mar 18, 2023
  5

• KeyError: '--cuff'

  YangLab/CIRCexplorer2#65 · Filter by author shelkmike opened on Feb 19, 2023
  3

• Is CIRCexplorer2 allowing for STAR-generated bam file as input?

  YangLab/CIRCexplorer2#64 · Filter by author lovebaboon1989 opened on Jan 24, 2023
  1

• want to use circexplorere2 for rat genome (Rnor_6.0)

  YangLab/CIRCexplorer2#63 · Filter by author sharmi85 opened on Aug 23, 2022
  1

• CIRCexplorer2 parse

  YangLab/CIRCexplorer2#61 · Filter by author muhammadharoon786 opened on Jun 20, 2022

• back_spliced_junctions.bed

  YangLab/CIRCexplorer2#59 · Filter by author ericbrzoska opened on Feb 16, 2022

• refFlat file for solanum lycopersicum in the annotating step

  YangLab/CIRCexplorer2#53 · Filter by author anuiranjan006 opened on Feb 25, 2021
  1

• CIRCexplorer2 parse Converted 0 fusion reads!

  YangLab/CIRCexplorer2#52 · Filter by author JianGuoZhou3 opened on Feb 18, 2021

• Export backspliced junctions as separate bam file.

  YangLab/CIRCexplorer2#50 · Filter by author kopardev opened on Dec 17, 2020