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Release 2026.3.1 - #115

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bencap merged 3 commits into
mavedb-mainfrom
mavedb-dev
Oct 19, 2026
Merged

bencap merged 3 commits into
mavedb-mainfrom
mavedb-dev

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@bencap

@bencap bencap commented Oct 19, 2026

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Adds a fix to reference identical alleles that prevents them from normalizing and reducing to a 0 length change.

bencap and others added 2 commits October 17, 2026 09:17
…-sequence deletions

VRS normalization trims an unchanged sequence to an empty alternate and writes
ReferenceLengthExpression(length=0), which describes deleting the whole
sequence. Since 4d35a8c every p.=, c.= and g.= variant was mapped that way.
Reference-identical alleles are now identified without normalizing, as they
were when introduced in 9e430c2, which also matches the digests MaveDB already
stores for them.
…o-normalize

fix(vrs_map): stop normalizing reference-identical alleles into whole-sequence deletions
@coveralls

coveralls commented Oct 19, 2026 •

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coverage: 0.0%. remained the same — mavedb-dev into mavedb-main

@bencap
bencap merged commit e389dfa into mavedb-main Oct 19, 2026
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2 participants