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Optimise checkpoints - #257

Merged

lohedges merged 7 commits into

develfrom

feature_optimise_checkpoint

Oct 20, 2026

Merged

Optimise checkpoints#257
lohedges merged 7 commits into
develfrom
feature_optimise_checkpoint

Commits on Oct 20, 2026
- Free committed repex systems before deleting their frames.
  lohedges
  committed
  c125092
- Free the committed system before deleting frames in the regular runner.
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  bdbc533
- Shorten checkpoint comments.
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  2974fb2
- Join trajectory chunks with DCD.concatenate instead of reloading the topology.
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  c786edd
- Append trajectory chunks in place and time frames from the first interval.
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  472128b
- Use plain arrays rather than numpy matrices for swap counts.
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  49e74f9
- Update CHANGELOG.
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  a7c54db