Issues

• Create outdir if not found

  bug
  DessimozLab/orthoxml-tools#45 · Filter by author ali-yz opened on Aug 3, 2026
  

• filter orthoxml based on list of species or list of HOG ids

  Feature

  DessimozLab/orthoxml-tools#44 · Filter by author sinamajidian opened on Mar 18, 2026
  3

• Extract strategy duplicates HOGs in a paralog group

  DessimozLab/orthoxml-tools#43 · Filter by author nromashchenko opened on Feb 18, 2026
  

• AttributeError: 'NoneType' object has no attribute 'remove'

  DessimozLab/orthoxml-tools#42 · Filter by author sinamajidian opened on Feb 13, 2026
  1

• filter example

  documentation
  DessimozLab/orthoxml-tools#41 · Filter by author sinamajidian opened on Feb 13, 2026

• add note to orthoxml to keep track of filtering

  Feature

  DessimozLab/orthoxml-tools#40 · Filter by author sinamajidian opened on Feb 10, 2026

• feature-request: report orthology type 1-to-1 or 1-to-many

  enhancement
  Feature

  DessimozLab/orthoxml-tools#39 · Filter by author sinamajidian opened on Dec 30, 2025

• filtering by completeness score changes species fields

  DessimozLab/orthoxml-tools#12 · Filter by author nromashchenko opened on Jun 20, 2025

• CompletenessScore filtering keeps genes from exluded HOGs

  DessimozLab/orthoxml-tools#11 · Filter by author nromashchenko opened on Jun 20, 2025