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@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

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  1. toil toil Public

    A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

    Python 936 247

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 279 51

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 55 22

  4. leonardo leonardo Public

    Notebook service

    Scala 45 21

  5. terra-docker terra-docker Public

    Python 32 35

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 27 5

Repositories

Showing 10 of 163 repositories
  • duos-ui Public

    Broad Institute Data Use Oversight System

    DataBiosphere/duos-ui's past year of commit activity
    TypeScript 12 BSD-3-Clause 4 0 7 Updated Oct 3, 2026
  • consent Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent's past year of commit activity
    Java 11 BSD-3-Clause 2 0 7 Updated Oct 3, 2026
  • meta-disco Public
    DataBiosphere/meta-disco's past year of commit activity
    Python 3 1 174 1 Updated Oct 2, 2026
  • toil Public

    A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

    DataBiosphere/toil's past year of commit activity
    Python 936 Apache-2.0 247 395 14 Updated Oct 2, 2026
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul's past year of commit activity
    Python 11 Apache-2.0 4 640 15 Updated Oct 2, 2026
  • leonardo Public

    Notebook service

    DataBiosphere/leonardo's past year of commit activity
    Scala 45 BSD-3-Clause 21 1 11 Updated Oct 2, 2026
  • terra-ui Public

    Web user interface for the Terra platform

    DataBiosphere/terra-ui's past year of commit activity
    TypeScript 55 BSD-3-Clause 22 145 2 Updated Oct 2, 2026
  • job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    DataBiosphere/job-manager's past year of commit activity
    TypeScript 27 BSD-3-Clause 5 104 12 Updated Oct 1, 2026
  • terra-scientific-pipelines-service Public
    DataBiosphere/terra-scientific-pipelines-service's past year of commit activity
    Java 2 BSD-3-Clause 0 0 2 Updated Oct 1, 2026
  • terra-workspace-data-service Public
    DataBiosphere/terra-workspace-data-service's past year of commit activity
    Java 6 BSD-3-Clause 0 0 2 Updated Oct 1, 2026
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