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Remove the references to the retired Bayesian kcat tuning - #73

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edkerk merged 1 commit into
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chore/remove-bayesian-traces
Oct 30, 2026
Merged

edkerk merged 1 commit into
mainfrom
chore/remove-bayesian-traces

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@edkerk edkerk commented Oct 30, 2026

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The evotune module (kcat_tuning.evotune) is the kcat tuning method, so the documentation and docstrings no longer refer to the retired ABC-SMC bayesianSensitivityTuning and its helpers.

  • docs/cmaes_vs_abc_smc.md is removed together with the links to it.
  • The migration guide maps cmaesKcatTuning to cmaes_kcat_tuning and has no entry for the retired function.
  • The evotune module docstrings describe their own behaviour instead of the retired MATLAB files, and params.py and the split report name EvotuneParams.
  • The tutorial note and two changelog sentences no longer mention the retired method.

@edkerk
edkerk merged commit b548955 into main Oct 30, 2026
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edkerk deleted the chore/remove-bayesian-traces branch October 30, 2026 16:14
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