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loadProtData: check the replicate count; calculateFfactor: average the measured samples - #18

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edkerk merged 1 commit into
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fix/parity-round-4
Oct 31, 2026
Merged

edkerk merged 1 commit into
developfrom
fix/parity-round-4

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@edkerk edkerk commented Oct 30, 2026

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  • loadProtData raises loadProtData:replicateMismatch when replPerCond does not add up to the replicate columns of the file (the columns after the UniProt ID), as geckopy's load_prot_data does.
  • calculateFfactor averages the samples of a protein in which it is measured, so a protein with a missing sample counts with its measurement in both sums of the f factor instead of dropping out of them.

…calculateFfactor averages over the measured samples
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Unit test results

63 tests   63 ✅  9s ⏱️
 1 suites   0 💤
 1 files     0 ❌

Results for commit 5ab9330.

@edkerk
edkerk merged commit 737dad2 into develop Oct 31, 2026
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@edkerk
edkerk deleted the fix/parity-round-4 branch October 31, 2026 15:03
@edkerk edkerk mentioned this pull request Nov 2, 2026
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