Both the database build workflow and the genome analysis workflow require functions for downloading genome fasta and annotation files from NCBI. We can accomplish this using the nf-core module ncbigenomedownload with the command line arguments found here
Both the database build workflow and the genome analysis workflow require functions for downloading genome fasta and annotation files from NCBI. We can accomplish this using the nf-core module ncbigenomedownload with the command line arguments found here