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@BMCV

BMCV

Biomedical Computer Vision Group

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  1. SuperDSM SuperDSM Public

    SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.

    Python 4 2

  2. galaxy-image-analysis galaxy-image-analysis Public

    Galaxy Image Analysis is an ELIXIR Service for computer-based image analysis in Galaxy.

    HTML 23 21

  3. docker-paraviewweb docker-paraviewweb Public archive

    🐳 ParaViewWeb running in a docker container. This image can be used to integrate ParaViewWeb into Galaxy

    Dockerfile 11 7

  4. segmetrics segmetrics Public

    Image segmentation and object detection performance measures

    Python 3

  5. ColocQuant-ColocJ ColocQuant-ColocJ Public

    Python 1

Repositories

Showing 10 of 18 repositories
  • galaxy-image-analysis Public

    Galaxy Image Analysis is an ELIXIR Service for computer-based image analysis in Galaxy.

    BMCV/galaxy-image-analysis's past year of commit activity
    HTML 23 MIT 21 3 3 Updated Oct 11, 2026
  • galaxy-image-analysis-docker Public
    BMCV/galaxy-image-analysis-docker's past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 1, 2026
  • BacLCT Public
    BMCV/BacLCT's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 15, 2026
  • giatools Public

    Tools required for Galaxy Image Analysis

    BMCV/giatools's past year of commit activity
    Python 0 MIT 0 4 0 Updated Sep 15, 2026
  • STReg Public
    BMCV/STReg's past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 28, 2026
  • galaxy-image-analysis-lint Public

    Linter for tool wrappers in Galaxy Image Analysis

    BMCV/galaxy-image-analysis-lint's past year of commit activity
    Python 1 MIT 0 0 0 Updated Aug 17, 2026
  • segmetrics Public

    Image segmentation and object detection performance measures

    BMCV/segmetrics's past year of commit activity
    Python 3 MIT 0 0 3 Updated Apr 2, 2026
  • mobi-fs3-python Public template

    Molecular Biotechnology, Methoden der Bioinformatik 3. FS, Bildanalyse, Programmierübungen

    BMCV/mobi-fs3-python's past year of commit activity
    Jupyter Notebook 1 MIT 1 0 0 Updated Jan 30, 2026
  • github-workflows Public

    GitHub workflows used across many repositories

    BMCV/github-workflows's past year of commit activity
    0 MIT 0 0 0 Updated Dec 26, 2025
  • mobi-fs5-python Public template

    Molecular Biotechnology, Bioinformatik 5. FS, Vertiefungspraktikum Python Standard, Gruppe Rohr

    BMCV/mobi-fs5-python's past year of commit activity
    Jupyter Notebook 1 MIT 1 0 0 Updated Nov 21, 2025
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