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AnalysisCommons

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  1. assocplot assocplot Public

    Configures "Regional association plot" from a data file, selected reference panel, and either an index SNP, index gene, or specific region by Chr Position

    R 1

  2. workshop workshop Public

    Handout for CHARGE 2017 Boston Workshop

    1

  3. genesis_wdl genesis_wdl Public

    WDL workflow for analysis based on the R GENESIS package

    R 1 2

  4. LDGds LDGds Public

    Calculate linkage disequilibrium from a GDS file.

    R 1 1

  5. genesis_app genesis_app Public

    DNA Nexus App for analysis based on the R GENESIS package

    R

  6. bcf2vcf bcf2vcf Public

    Converts BCF format file to VCF using bcftools

    Perl

Repositories

Showing 10 of 12 repositories
  • genesis_wdl Public

    WDL workflow for analysis based on the R GENESIS package

    AnalysisCommons/genesis_wdl's past year of commit activity
    R 1 MIT 2 1 0 Updated Sep 16, 2021
  • LDGds Public

    Calculate linkage disequilibrium from a GDS file.

    AnalysisCommons/LDGds's past year of commit activity
    R 1 MIT 1 0 0 Updated Jul 12, 2019
  • genesis_nullmodel Public

    Creates null model for use in genesis_tests

    AnalysisCommons/genesis_nullmodel's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Dec 20, 2017
  • genesis_tests Public

    Runs genetic association tests using the null model from the genesis_nullmodel App

    AnalysisCommons/genesis_tests's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Dec 20, 2017
  • workshop Public

    Handout for CHARGE 2017 Boston Workshop

    AnalysisCommons/workshop's past year of commit activity
    1 0 0 0 Updated Sep 26, 2017
  • genesis_app Public

    DNA Nexus App for analysis based on the R GENESIS package

    AnalysisCommons/genesis_app's past year of commit activity
    R 0 0 0 0 Updated Aug 11, 2017
  • convertVCF2GDS Public

    convertVCF2GDS

    AnalysisCommons/convertVCF2GDS's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jun 26, 2017
  • gild Public

    Takes a GDS file as input and uses PLINK to compute LD scores for a specified lead variant over a given base pair region. The output file may be used to create a regional association plot using the ‘assocplot’ applet.

    AnalysisCommons/gild's past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jun 26, 2017
  • qqplot Public

    Generates a qq plot from the input p-value data

    AnalysisCommons/qqplot's past year of commit activity
    R 0 0 0 0 Updated Jun 15, 2017
  • assocplot Public

    Configures "Regional association plot" from a data file, selected reference panel, and either an index SNP, index gene, or specific region by Chr Position

    AnalysisCommons/assocplot's past year of commit activity
    R 1 0 0 0 Updated Jun 15, 2017
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