Skip to content
@AllenNeuralDynamics

Allen Institute for Neural Dynamics

we're hiring: https://alleninstitute.org/careers/

Popular repositories Loading

  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 43 12

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 27 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 4

Repositories

Showing 10 of 712 repositories
  • brainwasher Public

    0354: control software for automated tissue clearing system

    AllenNeuralDynamics/brainwasher's past year of commit activity
    Python 0 MIT 1 15 8 Updated Oct 13, 2026
  • aind-data-schema-models Public

    Data models used in aind-data-schema

    AllenNeuralDynamics/aind-data-schema-models's past year of commit activity
    Python 0 MIT 5 2 0 Updated Oct 13, 2026
  • zombie Public
    AllenNeuralDynamics/zombie's past year of commit activity
    JavaScript 0 MIT 1 22 0 Updated Oct 13, 2026
  • aind-metadata-extractor Public

    Metadata extractors for AIND

    AllenNeuralDynamics/aind-metadata-extractor's past year of commit activity
    Python 0 MIT 1 5 10 Updated Oct 13, 2026
  • Aind.Behavior.Device.Olfactometer Public

    A repository for calibration and configuration of the harp olfactometer device

    AllenNeuralDynamics/Aind.Behavior.Device.Olfactometer's past year of commit activity
    Python 1 MIT 1 3 0 Updated Oct 13, 2026
  • harp.device.quac Public

    0364: This repository contains the hardware, firmware, and software related to the Harp quad DAC

    AllenNeuralDynamics/harp.device.quac's past year of commit activity
    C# 0 MIT 0 23 1 Updated Oct 13, 2026
  • aind-low-point Public

    A pinpoint knockoff but in python

    AllenNeuralDynamics/aind-low-point's past year of commit activity
    Python 0 MIT 0 0 5 Updated Oct 13, 2026
  • zephyr Public

    A network to predict breathing signals from video

    AllenNeuralDynamics/zephyr's past year of commit activity
    Python 0 MIT 0 2 0 Updated Oct 13, 2026
  • dynamic-foraging-processing-pipeline Public

    Pipeline to process dynamic foraging behavior only data acquired on new standard

    AllenNeuralDynamics/dynamic-foraging-processing-pipeline's past year of commit activity
    Nextflow 0 0 0 0 Updated Oct 13, 2026
  • aind-smartspim-classification Public

    Code for classifying the cell candidate outputs from aind-smartspim-segmentation within smartspim pipeline

    AllenNeuralDynamics/aind-smartspim-classification's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 13, 2026