Issues

• Maintainership changes

  DIncalciLab/samurai#70 · Filter by author lbeltrame opened on Jul 14, 2026

• SAMURAI incompatible with Nextflow 26.04+

  bug
  DIncalciLab/samurai#69 · Filter by author alepolak2512 opened on Jul 10, 2026
  3

• Add copy number plots for QDNAseq outputs to match ichorCNA and WisecondorX

  enhancement
  DIncalciLab/samurai#68 · Filter by author SaraPotente opened on Jul 9, 2026

• Add concatenated PDF output for restyled CNV plots

  enhancement
  DIncalciLab/samurai#67 · Filter by author SaraPotente opened on Jul 9, 2026

• FASTQC command number expected for "--memory"

  DIncalciLab/samurai#58 · Filter by author ahwanpandey opened on Dec 9, 2025
  6

• Paired Tumor/Normal workflow for ASCAT sc; sample concordance analyses for sWGS

  enhancement
  DIncalciLab/samurai#56 · Filter by author ahwanpandey opened on Nov 4, 2025
  3

• Multilane sequencing not handled correctly

  enhancement
  DIncalciLab/samurai#48 · Filter by author riederd opened on Sep 18, 2025
  4

• Error early if required parameters aren't set

  enhancement
  DIncalciLab/samurai#46 · Filter by author imdanique opened on Aug 23, 2025
  2

• Integration of HRDCNA module in liquid_biopsy subworkflow

  enhancement
  DIncalciLab/samurai#40 · Filter by author SaraPotente opened on Apr 29, 2025

• Update ascat_sc module

  enhancement
  DIncalciLab/samurai#37 · Filter by author SaraPotente opened on Feb 28, 2025

• Use scatter/gather in the alignment step

  enhancement
  DIncalciLab/samurai#18 · Filter by author lbeltrame opened on Aug 7, 2024

• Investigate Picard's CollectInsertSizeMetrics

  enhancement
  DIncalciLab/samurai#17 · Filter by author lbeltrame opened on May 9, 2024

• Write docs

  DIncalciLab/samurai#14 · Filter by author lbeltrame opened on Apr 22, 2024 · 1.0
  

• Write manual tests

  DIncalciLab/samurai#6 · Filter by author lbeltrame opened on Mar 13, 2024