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[MC/PWGEM] remove unnecessary files (#2484) #8747

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Run time

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Job	Run time
Shellcheck	19s
JSON	6s
File-IO-graph unit tests	8s
Config-check	7s
Workflow-runner unit tests	10s
Bash	6s
Pylint	28s
Test-harness unit tests	4s
	1m 28s