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[MC/PWGEM] remove unnecessary files (#2484) #8745

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Run time

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Job	Run time
JSON	6s
File-IO-graph unit tests	6s
Workflow-runner unit tests	11s
Pylint	31s
Test-harness unit tests	6s
Shellcheck	21s
Bash	5s
Config-check	6s
	1m 32s